Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002068.1 Corchorus capsularis cultivar CVL-1 contig02072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 605

Length: 1009
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:985 original size:24 final size:21

Alignment explanation


    Indices: 951--1006  Score: 67
    Period size: 21  Copynumber: 2.5  Consensus size: 21

        941 ACAAAAAAGA

                  *                 
        951 TTTGTCTAAGTCACTTCGTTTCTT
          1 TTTGTCCAAGTCACTTC---TCTT

                       *         
        975 TTTGTCCAAGTTACTTCTCTT
          1 TTTGTCCAAGTCACTTCTCTT

                       
        996 TTTGTCCAAGT
          1 TTTGTCCAAGT

       1007 TGC


Statistics
Matches: 30,  Mismatches: 2, Indels: 3
        0.86            0.06        0.09

Matches are distributed among these distances:
  21   15  0.50
  24   15  0.50

ACGTcount: A:0.14, C:0.21, G:0.12, T:0.52


Consensus pattern (21 bp):   
TTTGTCCAAGTCACTTCTCTT
Done.