Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002071.1 Corchorus capsularis cultivar CVL-1 contig02075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 949

Length: 1582
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:1551 original size:2 final size:2

Alignment explanation


    Indices: 1544--1582  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       1534 AAAGGAGAGC

                        *                                             
       1544 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.