Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002072.1 Corchorus capsularis cultivar CVL-1 contig02076, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1690
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33


Found at i:1472 original size:29 final size:28

Alignment explanation


    Indices: 1423--1479  Score: 73
    Period size: 29  Copynumber: 2.0  Consensus size: 28

       1413 TGACACTTAA

                                         
       1423 AAACTTATTTTCCAATATATAACATATTT
          1 AAACTTATTTTCCAATATATAACA-ATTT

                                          
       1452 AAACTTA-TTTCCTAA-ACTATAACAATTT
          1 AAACTTATTTTCC-AATA-TATAACAATTT

       1480 TTGCCACATA


Statistics
Matches: 26,  Mismatches: 0, Indels: 5
        0.84            0.00        0.16

Matches are distributed among these distances:
  28   10  0.38
  29   16  0.62

ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42


Consensus pattern (28 bp):   
AAACTTATTTTCCAATATATAACAATTT
Done.