Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002075.1 Corchorus capsularis cultivar CVL-1 contig02079, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32


Found at i:1505 original size:2 final size:2

Alignment explanation


    Indices: 1500--1566  Score: 91
    Period size: 2  Copynumber: 34.0  Consensus size: 2

       1490 TATATAGGGG

                               *        *           *        *            
       1500 TA TA TA TA TA TA TC TA TA TC TA -A TA TC TA TA TC TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                                                  
       1541 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA


Statistics
Matches: 56,  Mismatches: 8, Indels: 2
        0.85            0.12        0.03

Matches are distributed among these distances:
   1    1  0.02
   2   55  0.98

ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.