Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002078.1 Corchorus capsularis cultivar CVL-1 contig02082, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 814

Length: 1358
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33


Found at i:1120 original size:2 final size:2

Alignment explanation


    Indices: 1109--1144  Score: 65
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       1099 GTTGTTTAAT

                                                                   
       1109 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1145 GGTTGTGGGC


Statistics
Matches: 33,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   32  0.97

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.