Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002079.1 Corchorus capsularis cultivar CVL-1 contig02083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1753
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33


Found at i:1542 original size:23 final size:24

Alignment explanation


    Indices: 1506--1576  Score: 72
    Period size: 24  Copynumber: 2.9  Consensus size: 24

       1496 AACTATTGCA

                                      
       1506 AAAATATAATTTTTTAAAATTTTTT-
          1 AAAATA-AA-TTTTTAAAATTTTTTC

                        **  *       
       1531 AAAATAAATTTTGGAAGTTTTTTC
          1 AAAATAAATTTTTAAAATTTTTTC

                  *          *    
       1555 AAAATATATTTTTAAAAATTTT
          1 AAAATAAATTTTTAAAATTTTT

       1577 AATTGTATAC


Statistics
Matches: 37,  Mismatches: 8, Indels: 3
        0.77            0.17        0.06

Matches are distributed among these distances:
  23   12  0.32
  24   19  0.51
  25    6  0.16

ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51


Consensus pattern (24 bp):   
AAAATAAATTTTTAAAATTTTTTC

Done.