Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002080.1 Corchorus capsularis cultivar CVL-1 contig02084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1725
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33


Found at i:1674 original size:48 final size:49

Alignment explanation


    Indices: 1618--1719  Score: 179
    Period size: 48  Copynumber: 2.1  Consensus size: 49

       1608 GTCGCCAAGA

                                                             
       1618 CTCAATGAAATTTTTATACTCATCTAA-CCTAAACTCATAAAACCAAAT
          1 CTCAATGAAATTTTTATACTCATCTAACCCTAAACTCATAAAACCAAAT

                                                   **        
       1666 CTCAATGAAATTTTTATACTCATCTAACCCTAAACTCATCTAACCAAAT
          1 CTCAATGAAATTTTTATACTCATCTAACCCTAAACTCATAAAACCAAAT

                 
       1715 CTCAA
          1 CTCAA

       1720 CCATAT


Statistics
Matches: 51,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  48   27  0.53
  49   24  0.47

ACGTcount: A:0.41, C:0.25, G:0.02, T:0.31


Consensus pattern (49 bp):   
CTCAATGAAATTTTTATACTCATCTAACCCTAAACTCATAAAACCAAAT

Done.