Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002089.1 Corchorus capsularis cultivar CVL-1 contig02093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1961
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36


Found at i:343 original size:27 final size:28

Alignment explanation


    Indices: 313--367  Score: 85
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        303 CCCATTTTAC

                           *      *     
        313 TATGTATT-GGTTTTTTTTATATAAAAA
          1 TATGTATTGGGTTTTGTTTATAAAAAAA

                                        
        340 TATGTATTGGGTTTTGTTTATAAAAAAA
          1 TATGTATTGGGTTTTGTTTATAAAAAAA

        368 AAAAAAACTA


Statistics
Matches: 25,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  27    8  0.32
  28   17  0.68

ACGTcount: A:0.35, C:0.00, G:0.15, T:0.51


Consensus pattern (28 bp):   
TATGTATTGGGTTTTGTTTATAAAAAAA

Found at i:1603 original size:24 final size:24

Alignment explanation


    Indices: 1576--1624  Score: 98
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1566 CTTAAACTTC

                                    
       1576 TAATCCTGTATATTAATAATTATT
          1 TAATCCTGTATATTAATAATTATT

                                    
       1600 TAATCCTGTATATTAATAATTATT
          1 TAATCCTGTATATTAATAATTATT

             
       1624 T
          1 T

       1625 GATACACTGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.37, C:0.08, G:0.04, T:0.51


Consensus pattern (24 bp):   
TAATCCTGTATATTAATAATTATT
Done.