Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002106.1 Corchorus capsularis cultivar CVL-1 contig02110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 958

Length: 1597
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:114 original size:27 final size:24

Alignment explanation


    Indices: 57--104  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

         47 AGTAGAACGC

                     *              
         57 TCATTATGTTCCTCCTTTTTTTTA
          1 TCATTATGTCCCTCCTTTTTTTTA

                                    
         81 TCATTATGTCCCTCCTTTTTTTTA
          1 TCATTATGTCCCTCCTTTTTTTTA

        105 CTATCTTTAT


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.12, C:0.23, G:0.04, T:0.60


Consensus pattern (24 bp):   
TCATTATGTCCCTCCTTTTTTTTA

Found at i:687 original size:17 final size:17

Alignment explanation


    Indices: 665--708  Score: 88
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        655 AGTATCCGTT

                             
        665 CATTATATATGATAATA
          1 CATTATATATGATAATA

                             
        682 CATTATATATGATAATA
          1 CATTATATATGATAATA

                      
        699 CATTATATAT
          1 CATTATATAT

        709 TATATATGAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43


Consensus pattern (17 bp):   
CATTATATATGATAATA
Done.