Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002110.1 Corchorus capsularis cultivar CVL-1 contig02114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1005
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:497 original size:57 final size:57

Alignment explanation


    Indices: 428--538  Score: 197
    Period size: 57  Copynumber: 1.9  Consensus size: 57

        418 GGATGAAGAA

                                                  *                  
        428 GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCGATATGATTTATCTCATGG
          1 GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCATGG

                                                                   
        485 GATGAATG-AATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCA
          1 GATGAA-GAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCA

        539 GAGTAGATGG


Statistics
Matches: 52,  Mismatches: 1, Indels: 2
        0.95            0.02        0.04

Matches are distributed among these distances:
  57   51  0.98
  58    1  0.02

ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31


Consensus pattern (57 bp):   
GATGAAGAAATGGAAAAACTGGTTAAGGGGTCATTATCAATATGATTTATCTCATGG
Done.