Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002114.1 Corchorus capsularis cultivar CVL-1 contig02118, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 907

Length: 1512
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.32


Found at i:113 original size:18 final size:18

Alignment explanation


    Indices: 90--127  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         80 GCCAAAAAAG

                              
         90 ATTTATTTATTATTCATT
          1 ATTTATTTATTATTCATT

                              
        108 ATTTATTTATTATTCATT
          1 ATTTATTTATTATTCATT

              
        126 AT
          1 AT

        128 ATGGTTGTTA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66


Consensus pattern (18 bp):   
ATTTATTTATTATTCATT
Done.