Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002130.1 Corchorus capsularis cultivar CVL-1 contig02134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1483
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--46  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

                                                                         *
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AA
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                   
         42 AT AT A
          1 AT AT A

         47 ATGTAATCCC


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
   1    1  0.02
   2   40  0.98

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Found at i:579 original size:20 final size:20

Alignment explanation


    Indices: 554--591  Score: 76
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        544 TCAGTGAATC

                                
        554 TGTGCTTTTCTAGACTAATA
          1 TGTGCTTTTCTAGACTAATA

                              
        574 TGTGCTTTTCTAGACTAA
          1 TGTGCTTTTCTAGACTAA

        592 AACGGGGCGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45


Consensus pattern (20 bp):   
TGTGCTTTTCTAGACTAATA
Done.