Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000214.1 Corchorus capsularis cultivar CVL-1 contig00214, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:791 original size:33 final size:33

Alignment explanation


    Indices: 697--820  Score: 135
    Period size: 33  Copynumber: 3.7  Consensus size: 33

        687 TAGACAAAGG

                                   *    *     
        697 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCC-AT

                **    *      *     *         
        730 GTCGTTTGGCGGGTTGTAGCCGGCCATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                                              
        763 GTCGCGTGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                                     
        796 GTCGCGTGGCCGGTCTTGTGGCCGG
          1 GTCGCGTGGCCGG--TTGTGGCCGG

        821 TGTTGCGCGG


Statistics
Matches: 75,  Mismatches: 11, Indels: 8
        0.80            0.12        0.09

Matches are distributed among these distances:
  32    3  0.04
  33   63  0.84
  35    7  0.09
  36    2  0.03

ACGTcount: A:0.07, C:0.27, G:0.43, T:0.23


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.