Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002141.1 Corchorus capsularis cultivar CVL-1 contig02145, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1271
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41


Found at i:1101 original size:19 final size:19

Alignment explanation


    Indices: 1079--1120  Score: 66
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       1069 AGATGTGCAA

                   *           
       1079 TTTTTATTTTATTTTGAAT
          1 TTTTTATATTATTTTGAAT

                      *        
       1098 TTTTTATATTGTTTTGAAT
          1 TTTTTATATTATTTTGAAT

                
       1117 TTTT
          1 TTTT

       1121 AAAAAATTGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74


Consensus pattern (19 bp):   
TTTTTATATTATTTTGAAT
Done.