Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002145.1 Corchorus capsularis cultivar CVL-1 contig02149, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 868

Length: 1448
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42


Found at i:268 original size:7 final size:7

Alignment explanation


    Indices: 256--294  Score: 51
    Period size: 7  Copynumber: 5.4  Consensus size: 7

        246 AATTAAAATA

                   
        256 ATATAAT
          1 ATATAAT

                   
        263 ATATAAT
          1 ATATAAT

             *     
        270 AAATAAT
          1 ATATAAT

                    
        277 ATATTAAT
          1 ATA-TAAT

              *    
        285 ATGTAAT
          1 ATATAAT

               
        292 ATA
          1 ATA

        295 ACATGAAATT


Statistics
Matches: 27,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
   7   21  0.78
   8    6  0.22

ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41


Consensus pattern (7 bp):   
ATATAAT

Found at i:294 original size:15 final size:14

Alignment explanation


    Indices: 252--285  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 14

        242 TAAGAATTAA

                           
        252 AATAATATAATATAT
          1 AATAA-ATAATATAT

                           
        267 AATAAATAATATATT
          1 AATAAATAATATA-T

                
        282 AATA
          1 AATA

        286 TGTAATATAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14    8  0.44
  15   10  0.56

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (14 bp):   
AATAAATAATATAT
Done.