Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002148.1 Corchorus capsularis cultivar CVL-1 contig02152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1883
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39


Found at i:439 original size:2 final size:2

Alignment explanation


    Indices: 432--477  Score: 74
    Period size: 2  Copynumber: 22.5  Consensus size: 2

        422 TGAAACCATG

                                *                                          
        432 AT AT AT AT ACT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                
        475 AT A
          1 AT A

        478 CTACATATTA


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
   2   39  0.95
   3    2  0.05

ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46


Consensus pattern (2 bp):   
AT

Done.