Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002159.1 Corchorus capsularis cultivar CVL-1 contig02163, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36


Found at i:859 original size:12 final size:12

Alignment explanation


    Indices: 841--873  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        831 ATATATATTA

                        
        841 TTTTCTTTTTT-
          1 TTTTCTTTTTTG

                         
        852 TATTTCTTTTTTG
          1 T-TTTCTTTTTTG

                     
        865 TTTTCTTTT
          1 TTTTCTTTT

        874 CTCATATTTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  11    1  0.05
  12   18  0.90
  13    1  0.05

ACGTcount: A:0.03, C:0.09, G:0.03, T:0.85


Consensus pattern (12 bp):   
TTTTCTTTTTTG
Done.