Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002169.1 Corchorus capsularis cultivar CVL-1 contig02173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1398
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:1143 original size:13 final size:13

Alignment explanation


    Indices: 1125--1151  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       1115 GTCACCGGAT

                         
       1125 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
       1138 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
       1151 T
          1 T

       1152 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.