Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002181.1 Corchorus capsularis cultivar CVL-1 contig02186, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:1157 original size:33 final size:32

Alignment explanation


    Indices: 1096--1157  Score: 79
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1086 GGGACGGCAC

                    * *    *       *        
       1096 GCCATGGCTAGGCCGTCCCCTGGGGCGGCTGA
          1 GCCATGGCCAAGCCGCCCCCTGGAGCGGCTGA

                                          
       1128 GCCATGGCCAAGCCGCCCTCCTGGAGCGGC
          1 GCCATGGCCAAGCCGCCC-CCTGGAGCGGC

       1158 ACTACCAT


Statistics
Matches: 25,  Mismatches: 4, Indels: 1
        0.83            0.13        0.03

Matches are distributed among these distances:
  32   15  0.60
  33   10  0.40

ACGTcount: A:0.11, C:0.39, G:0.37, T:0.13


Consensus pattern (32 bp):   
GCCATGGCCAAGCCGCCCCCTGGAGCGGCTGA
Done.