Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002184.1 Corchorus capsularis cultivar CVL-1 contig02189, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1131
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32


Found at i:1065 original size:14 final size:14

Alignment explanation


    Indices: 1043--1077  Score: 61
    Period size: 14  Copynumber: 2.5  Consensus size: 14

       1033 CAATTATGTA

                *         
       1043 TTTATTTATTTAGT
          1 TTTACTTATTTAGT

                          
       1057 TTTACTTATTTAGT
          1 TTTACTTATTTAGT

                   
       1071 TTTACTT
          1 TTTACTT

       1078 TGTAACTAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   20  1.00

ACGTcount: A:0.20, C:0.06, G:0.06, T:0.69


Consensus pattern (14 bp):   
TTTACTTATTTAGT
Done.