Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002196.1 Corchorus capsularis cultivar CVL-1 contig02201, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 636

Length: 1061
ACGTcount: A:0.37, C:0.11, G:0.12, T:0.39


Found at i:556 original size:3 final size:3

Alignment explanation


    Indices: 548--651  Score: 100
    Period size: 3  Copynumber: 33.3  Consensus size: 3

        538 TTTGTGGCAA

                                                              *      *  *  
        548 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ATAT CTAT ACCTT TAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT -AAT A--AT AAT

             *   *  **                            *                        
        597 ATT ATT TTT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

                     
        645 AAT AAT A
          1 AAT AAT A

        652 TATCTATACC


Statistics
Matches: 85,  Mismatches: 12, Indels: 8
        0.81            0.11        0.08

Matches are distributed among these distances:
   3   80  0.94
   4    4  0.05
   5    1  0.01

ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38


Consensus pattern (3 bp):   
AAT

Done.