Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000220.1 Corchorus capsularis cultivar CVL-1 contig00220, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 609

Length: 1016
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29


Found at i:208 original size:33 final size:33

Alignment explanation


    Indices: 165--288  Score: 151
    Period size: 33  Copynumber: 3.7  Consensus size: 33

        155 TAGACAAAGG

                                   *    *   *
        165 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCAA
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                **           *     *         
        198 GTCGTTTGGCCGGTTGTAGCCGGCCATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                                              
        231 GTCGCGTGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                                     
        264 GTCGCGTGGCCGGTCTTGTGGCCGG
          1 GTCGCGTGGCCGG--TTGTGGCCGG

        289 TGTTGCGCGG


Statistics
Matches: 77,  Mismatches: 10, Indels: 6
        0.83            0.11        0.06

Matches are distributed among these distances:
  32    2  0.03
  33   66  0.86
  35    7  0.09
  36    2  0.03

ACGTcount: A:0.08, C:0.27, G:0.41, T:0.23


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.