Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002202.1 Corchorus capsularis cultivar CVL-1 contig02207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 727

Length: 1212
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:681 original size:58 final size:59

Alignment explanation


    Indices: 579--692  Score: 194
    Period size: 58  Copynumber: 1.9  Consensus size: 59

        569 GGATGAAGAA

                                                   *                   
        579 GATGAAGAAATAGGAAAACTGGGTTAAGGGGTCATTATCGATATGATTTATCTCAGTGG
          1 GATGAAGAAATAGGAAAACTGGGTTAAGGGGTCATTATCAATATGATTTATCTCAGTGG

                  * *                                               
        638 GATGAATAGATAGGAAAACT-GGTTAAGGGGTCATTATCAATATGATTTATCTCAG
          1 GATGAAGAAATAGGAAAACTGGGTTAAGGGGTCATTATCAATATGATTTATCTCAG

        693 AGTAGATGGC


Statistics
Matches: 52,  Mismatches: 3, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  58   34  0.65
  59   18  0.35

ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30


Consensus pattern (59 bp):   
GATGAAGAAATAGGAAAACTGGGTTAAGGGGTCATTATCAATATGATTTATCTCAGTGG
Done.