Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000221.1 Corchorus capsularis cultivar CVL-1 contig00221, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2192
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36


Found at i:2025 original size:19 final size:20

Alignment explanation


    Indices: 1988--2023  Score: 58
    Period size: 19  Copynumber: 1.9  Consensus size: 20

       1978 ATTTTTAAGT

                                
       1988 AAAAATATAATATATAAATA
          1 AAAAATATAATATATAAATA

                              
       2008 AAAAAT-TAATAT-TAAA
          1 AAAAATATAATATATAAA

       2024 ATGATTAATT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    4  0.25
  19    6  0.38
  20    6  0.38

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (20 bp):   
AAAAATATAATATATAAATA
Done.