Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002214.1 Corchorus capsularis cultivar CVL-1 contig02219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Found at i:330 original size:14 final size:14

Alignment explanation


    Indices: 311--338  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        301 AACACCATCG

                          
        311 GATTCTAAACGGAT
          1 GATTCTAAACGGAT

                          
        325 GATTCTAAACGGAT
          1 GATTCTAAACGGAT

        339 AAAAGCAGGC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29


Consensus pattern (14 bp):   
GATTCTAAACGGAT

Found at i:1041 original size:2 final size:2

Alignment explanation


    Indices: 1034--1067  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1024 AAATAAATAA

                                                              
       1034 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1068 TGCTTATATG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.