Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002220.1 Corchorus capsularis cultivar CVL-1 contig02226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:942 original size:18 final size:18

Alignment explanation


    Indices: 915--951  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        905 TTAAACATTT

                 *            
        915 TCTTATTGATGATGATGA
          1 TCTTACTGATGATGATGA

                              
        933 TCTTACTGATGATGATGA
          1 TCTTACTGATGATGATGA

             
        951 T
          1 T

        952 ATCGATTTTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43


Consensus pattern (18 bp):   
TCTTACTGATGATGATGA
Done.