Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002221.1 Corchorus capsularis cultivar CVL-1 contig02227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 657

Length: 1095
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:1063 original size:24 final size:24

Alignment explanation


    Indices: 1015--1061  Score: 69
    Period size: 23  Copynumber: 2.0  Consensus size: 24

       1005 GAGGATGTCT

                    *               
       1015 TATATATATTAAGACTATATTAAA
          1 TATATATAGTAAGACTATATTAAA

                          *         
       1039 TATATATAGT-AGATTATATTAAA
          1 TATATATAGTAAGACTATATTAAA

       1062 ATGAAAAAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  23   12  0.57
  24    9  0.43

ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43


Consensus pattern (24 bp):   
TATATATAGTAAGACTATATTAAA
Done.