Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002223.1 Corchorus capsularis cultivar CVL-1 contig02229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 903

Length: 1506
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37


Found at i:747 original size:19 final size:19

Alignment explanation


    Indices: 723--760  Score: 76
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        713 ACAAAGAATT

                               
        723 TCCATCACAACATAAAAAA
          1 TCCATCACAACATAAAAAA

                               
        742 TCCATCACAACATAAAAAA
          1 TCCATCACAACATAAAAAA

        761 GGGACTTGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.58, C:0.26, G:0.00, T:0.16


Consensus pattern (19 bp):   
TCCATCACAACATAAAAAA

Found at i:1132 original size:20 final size:20

Alignment explanation


    Indices: 1107--1146  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1097 GCTTGACCAA

                                
       1107 TTACCAATTAATAGAAAAAC
          1 TTACCAATTAATAGAAAAAC

                                
       1127 TTACCAATTAATAGAAAAAC
          1 TTACCAATTAATAGAAAAAC

       1147 AATTCAAGTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25


Consensus pattern (20 bp):   
TTACCAATTAATAGAAAAAC

Found at i:1400 original size:27 final size:27

Alignment explanation


    Indices: 1363--1416  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1353 TTGAATCGAG

                                       
       1363 ATATAAAAAAGAAAGTTACCAATAATT
          1 ATATAAAAAAGAAAGTTACCAATAATT

                                       
       1390 ATATAAAAAAGAAAGTTACCAATAATT
          1 ATATAAAAAAGAAAGTTACCAATAATT

       1417 TAAATACAAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26


Consensus pattern (27 bp):   
ATATAAAAAAGAAAGTTACCAATAATT
Done.