Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01002229.1 Corchorus capsularis cultivar CVL-1 contig02235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1335

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--154
18
1.9
18
100
0
70
42
0
5
51
1.25
153--227
21
3.2
21
70
22
69
33
6
8
52
1.57
154--236
24
3.4
24
71
21
82
33
7
8
50
1.60
138--262
49
2.6
49
100
0
250
35
5
8
51
1.55
178--261
25
3.4
25
68
21
77
33
5
8
52
1.56
1104--1156
6
9.2
6
76
15
58
66
3
0
30
1.10
1104--1160
10
5.7
10
73
22
57
66
3
0
29
1.08
1110--1166
18
3.3
18
83
13
75
68
3
0
28
1.06
1104--1164
16
4.5
14
73
26
60
67
3
0
29
1.07

Tables:   1

The End!