Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002237.1 Corchorus capsularis cultivar CVL-1 contig02243, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 875

Length: 1459
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:122 original size:2 final size:2

Alignment explanation


    Indices: 117--150  Score: 59
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        107 TTGATCAATC

                                                              
        117 TA TA TA TA TA TA TA TA TA TA TA TA TA GTA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA T

        151 GAATAATCTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   29  0.94
   3    2  0.06

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.