Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002246.1 Corchorus capsularis cultivar CVL-1 contig02252, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1031
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36


Found at i:403 original size:21 final size:21

Alignment explanation


    Indices: 373--414  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        363 AATTAACTCT

                 *               
        373 AATATTATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

                                 
        394 AATATAATCTAATATAATAAG
          1 AATATAATCTAATATAATAAG

        415 TTATCATTCT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36


Consensus pattern (21 bp):   
AATATAATCTAATATAATAAG
Done.