Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002253.1 Corchorus capsularis cultivar CVL-1 contig02259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 782

Length: 1304
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32


Found at i:266 original size:2 final size:2

Alignment explanation


    Indices: 261--292  Score: 64
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        251 GTTGTAGGAT

                                                           
        261 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        293 AGTCAGACGA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:633 original size:13 final size:14

Alignment explanation


    Indices: 602--630  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        592 TATACTATAG

                          
        602 TTGTACTCATTATT
          1 TTGTACTCATTATT

                          
        616 TTGTACTCATTATT
          1 TTGTACTCATTATT

             
        630 T
          1 T

        631 GTAGTATTGT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59


Consensus pattern (14 bp):   
TTGTACTCATTATT
Done.