Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002266.1 Corchorus capsularis cultivar CVL-1 contig02272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 729

Length: 1215
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:399 original size:15 final size:15

Alignment explanation


    Indices: 381--410  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        371 TTATTTCATT

                           
        381 AGAGGTAGAGGGCAA
          1 AGAGGTAGAGGGCAA

                           
        396 AGAGGTAGAGGGCAA
          1 AGAGGTAGAGGGCAA

        411 CCCTAAAACA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.40, C:0.07, G:0.47, T:0.07


Consensus pattern (15 bp):   
AGAGGTAGAGGGCAA

Found at i:441 original size:26 final size:26

Alignment explanation


    Indices: 412--463  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        402 AGAGGGCAAC

                                      
        412 CCTAAAACAAAGTGCACTATTTTTGT
          1 CCTAAAACAAAGTGCACTATTTTTGT

                                      
        438 CCTAAAACAAAGTGCACTATTTTTGT
          1 CCTAAAACAAAGTGCACTATTTTTGT

        464 TGCTTTAATT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35


Consensus pattern (26 bp):   
CCTAAAACAAAGTGCACTATTTTTGT
Done.