Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002269.1 Corchorus capsularis cultivar CVL-1 contig02275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 940

Length: 1567
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35


Found at i:1232 original size:15 final size:16

Alignment explanation


    Indices: 1212--1252  Score: 59
    Period size: 15  Copynumber: 2.7  Consensus size: 16

       1202 AAATTTAATT

                            
       1212 GTTACTTTCCCT-AAA
          1 GTTACTTTCCCTGAAA

                            
       1227 GTTACTTTCCCTGAAA
          1 GTTACTTTCCCTGAAA

              *        
       1243 -TCACTTTCCC
          1 GTTACTTTCCC

       1253 AATAATCACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  15   21  0.88
  16    3  0.12

ACGTcount: A:0.22, C:0.32, G:0.07, T:0.39


Consensus pattern (16 bp):   
GTTACTTTCCCTGAAA
Done.