Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002289.1 Corchorus capsularis cultivar CVL-1 contig02295, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1081
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31


Found at i:742 original size:13 final size:13

Alignment explanation


    Indices: 724--749  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        714 GTTTATCAAT

                         
        724 TATTCATGAAGAA
          1 TATTCATGAAGAA

                         
        737 TATTCATGAAGAA
          1 TATTCATGAAGAA

        750 CTTCTGAACT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31


Consensus pattern (13 bp):   
TATTCATGAAGAA
Done.