Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002297.1 Corchorus capsularis cultivar CVL-1 contig02303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 601

Length: 1002
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38


Found at i:204 original size:26 final size:25

Alignment explanation


    Indices: 175--228  Score: 65
    Period size: 26  Copynumber: 2.1  Consensus size: 25

        165 TCGATTTTTG

                                       
        175 AAAA-AAAAAAATGCAAAAGAAAAATT
          1 AAAATAAAAAAATG-AAAA-AAAAATT

                                   *  
        201 AAAATTAAAAAAATGAAAAAAAACTT
          1 AAAA-TAAAAAAATGAAAAAAAAATT

              
        227 AA
          1 AA

        229 CTGTTTCCGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 4
        0.83            0.03        0.13

Matches are distributed among these distances:
  26   12  0.48
  27    4  0.16
  28    9  0.36

ACGTcount: A:0.76, C:0.04, G:0.06, T:0.15


Consensus pattern (25 bp):   
AAAATAAAAAAATGAAAAAAAAATT

Found at i:927 original size:2 final size:2

Alignment explanation


    Indices: 920--958  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        910 TTTGTGTATT

                                    *                                 
        920 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        959 TTAACTTGGT


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.