Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002316.1 Corchorus capsularis cultivar CVL-1 contig02322, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1167
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39


Found at i:139 original size:18 final size:18

Alignment explanation


    Indices: 116--151  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        106 GGATCATATA

                              
        116 GTTTAGGCAAGTATTCTT
          1 GTTTAGGCAAGTATTCTT

                              
        134 GTTTAGGCAAGTATTCTT
          1 GTTTAGGCAAGTATTCTT

        152 TTTGAGTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44


Consensus pattern (18 bp):   
GTTTAGGCAAGTATTCTT
Done.