Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002329.1 Corchorus capsularis cultivar CVL-1 contig02335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28


Found at i:716 original size:13 final size:13

Alignment explanation


    Indices: 698--724  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        688 GTCACCGGAT

                         
        698 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
        711 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
        724 T
          1 T

        725 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.