Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000235.1 Corchorus capsularis cultivar CVL-1 contig00235, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 967

Length: 1613
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26


Found at i:818 original size:22 final size:22

Alignment explanation


    Indices: 790--832  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        780 TGGCTTGCGC

                                  
        790 CCGCGCGCGGCCTGATCCAGGT
          1 CCGCGCGCGGCCTGATCCAGGT

                      *   *      
        812 CCGCGCGCGGTCTGCTCCAGG
          1 CCGCGCGCGGCCTGATCCAGG

        833 CGATTTTTCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.07, C:0.42, G:0.37, T:0.14


Consensus pattern (22 bp):   
CCGCGCGCGGCCTGATCCAGGT
Done.