Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002352.1 Corchorus capsularis cultivar CVL-1 contig02358, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1477
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23


Found at i:1412 original size:13 final size:13

Alignment explanation


    Indices: 1394--1440  Score: 62
    Period size: 13  Copynumber: 3.6  Consensus size: 13

       1384 CATCCATCAG

                         
       1394 CAAGTGCCGATGC
          1 CAAGTGCCGATGC

                         
       1407 CAAGTGCC-AT-C
          1 CAAGTGCCGATGC

                           
       1418 AGCAAGTGCCGATGC
          1 --CAAGTGCCGATGC

                    
       1433 CAAGTGCC
          1 CAAGTGCC

       1441 ATCGGAGAAT


Statistics
Matches: 30,  Mismatches: 0, Indels: 8
        0.79            0.00        0.21

Matches are distributed among these distances:
  11    1  0.03
  12    2  0.07
  13   24  0.80
  14    2  0.07
  15    1  0.03

ACGTcount: A:0.26, C:0.32, G:0.28, T:0.15


Consensus pattern (13 bp):   
CAAGTGCCGATGC

Found at i:1462 original size:26 final size:26

Alignment explanation


    Indices: 1387--1443  Score: 114
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1377 CAAGTGCCAT

                                      
       1387 CCATCAGCAAGTGCCGATGCCAAGTG
          1 CCATCAGCAAGTGCCGATGCCAAGTG

                                      
       1413 CCATCAGCAAGTGCCGATGCCAAGTG
          1 CCATCAGCAAGTGCCGATGCCAAGTG

                 
       1439 CCATC
          1 CCATC

       1444 GGAGAATGCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   31  1.00

ACGTcount: A:0.26, C:0.33, G:0.25, T:0.16


Consensus pattern (26 bp):   
CCATCAGCAAGTGCCGATGCCAAGTG
Done.