Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000236.1 Corchorus capsularis cultivar CVL-1 contig00236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1756
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39


Found at i:55 original size:33 final size:32

Alignment explanation


    Indices: 1--97  Score: 95
    Period size: 33  Copynumber: 2.9  Consensus size: 32

                    * *                      
          1 CATGGCCAAGTCGCCCTCCTGGGGCGGCACTAC
          1 CATGGCCAGGCCGCCC-CCTGGGGCGGCACTAC

                                      * *  * 
         34 CATGGCCAGGCCGCCTCCCTGGGGCGACTCTGC
          1 CATGGCCAGGCCGCC-CCCTGGGGCGGCACTAC

                 **  *                     
         67 CATGGATAGACCGCCCCCCTGGGGCGGCACT
          1 CATGGCCAGGCCG-CCCCCTGGGGCGGCACT

         98 GGTACTAAAC


Statistics
Matches: 52,  Mismatches: 10, Indels: 4
        0.79            0.15        0.06

Matches are distributed among these distances:
  33   49  0.94
  34    3  0.06

ACGTcount: A:0.13, C:0.40, G:0.32, T:0.14


Consensus pattern (32 bp):   
CATGGCCAGGCCGCCCCCTGGGGCGGCACTAC

Found at i:680 original size:21 final size:21

Alignment explanation


    Indices: 655--694  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        645 ACCATTTTAA

                                 
        655 TTAAACGATAACCTTTTAGCC
          1 TTAAACGATAACCTTTTAGCC

                 *             
        676 TTAAATGATAACCTTTTAG
          1 TTAAACGATAACCTTTTAG

        695 ATATTACTTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38


Consensus pattern (21 bp):   
TTAAACGATAACCTTTTAGCC
Done.