Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002363.1 Corchorus capsularis cultivar CVL-1 contig02369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1141
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31


Found at i:68 original size:17 final size:19

Alignment explanation


    Indices: 27--65  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

         17 TGGGAATGCG

                               
         27 ATAAAAGTAATTCGAATAT
          1 ATAAAAGTAATTCGAATAT

                               
         46 ATAAAAGTAATTCGAATAT
          1 ATAAAAGTAATTCGAATAT

             
         65 A
          1 A

         66 AAATAAATAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31


Consensus pattern (19 bp):   
ATAAAAGTAATTCGAATAT
Done.