Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002378.1 Corchorus capsularis cultivar CVL-1 contig02384, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29


Found at i:1429 original size:18 final size:18

Alignment explanation


    Indices: 1406--1441  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1396 TTCTAATTTC

                              
       1406 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

                              
       1424 TATGTGTATTAAATTACT
          1 TATGTGTATTAAATTACT

       1442 ATAGTATGAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50


Consensus pattern (18 bp):   
TATGTGTATTAAATTACT
Done.