Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000238.1 Corchorus capsularis cultivar CVL-1 contig00238, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4087
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:3295 original size:51 final size:51

Alignment explanation


    Indices: 3195--3295  Score: 134
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       3185 TTCTTCATAT

                                                    * **       
       3195 TTTCCTTGTTTCAATCTTGTCTCCGGACAAAAGAACACTATTTTAGTGTTA
          1 TTTCCTTGTTTCAATCTTGTCTCCGGACAAAAGAACACTAGTACAGTGTTA

                                         *                      
       3246 TTTCCTTGTTTCAATCTTGTCTCCGGACGTAAA-AACACT-GTACACGTGTT
          1 TTTCCTTGTTTCAATCTTGTCTCCGGAC-AAAAGAACACTAGTACA-GTGTT

       3296 TCTCTCTCGG


Statistics
Matches: 44,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  50    2  0.05
  51   39  0.89
  52    3  0.07

ACGTcount: A:0.24, C:0.22, G:0.15, T:0.40


Consensus pattern (51 bp):   
TTTCCTTGTTTCAATCTTGTCTCCGGACAAAAGAACACTAGTACAGTGTTA
Done.