Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002388.1 Corchorus capsularis cultivar CVL-1 contig02394, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30


Found at i:235 original size:23 final size:24

Alignment explanation


    Indices: 209--255  Score: 87
    Period size: 23  Copynumber: 2.0  Consensus size: 24

        199 AATCCTTTAT

                                    
        209 TTTTTTTTTTAGA-TTTACTTAGA
          1 TTTTTTTTTTAGATTTTACTTAGA

                                    
        232 TTTTTTTTTTAGATTTTACTTAGA
          1 TTTTTTTTTTAGATTTTACTTAGA

        256 ATAGAAAACT


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  23   13  0.57
  24   10  0.43

ACGTcount: A:0.21, C:0.04, G:0.09, T:0.66


Consensus pattern (24 bp):   
TTTTTTTTTTAGATTTTACTTAGA
Done.