Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002397.1 Corchorus capsularis cultivar CVL-1 contig02403, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 664

Length: 1107
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40


Found at i:1046 original size:14 final size:14

Alignment explanation


    Indices: 1027--1056  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1017 TTTTTATCTA

                      *   
       1027 TTATTGTATTTATT
          1 TTATTGTATTAATT

                          
       1041 TTATTGTATTAATT
          1 TTATTGTATTAATT

              
       1055 TT
          1 TT

       1057 TTAATTATTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70


Consensus pattern (14 bp):   
TTATTGTATTAATT
Done.