genome.fa.s24.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000024.1 Corchorus capsularis cultivar CVL-1 contig00024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4074

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
983--1222	8	31.5	8	70	16	97	45	5	20	27	1.73
983--1141	22	7.2	23	69	22	74	45	3	20	29	1.68
997--1222	14	15.4	14	71	19	92	46	5	20	27	1.73
1021--1236	22	10.0	21	73	17	119	46	6	19	27	1.74
1028--1201	52	3.5	50	82	12	171	46	6	20	27	1.74
1068--1149	42	2.0	41	85	7	112	47	6	20	25	1.73
1113--1222	30	3.7	30	77	15	113	45	8	20	25	1.79
1184--1236	21	2.5	21	87	9	72	45	9	18	26	1.80
1111--1236	8	17.3	7	74	18	64	46	7	20	25	1.78
1325--1608	22	13.2	20	74	15	148	43	4	22	29	1.72
1346--1527	36	5.1	34	83	9	181	44	3	22	29	1.69
1288--1400	58	1.9	58	83	3	147	44	5	19	30	1.73
1346--1519	72	2.4	72	87	6	237	44	3	22	29	1.69
1417--1549	8	18.9	7	72	18	75	43	3	24	29	1.69
1450--1607	63	2.6	64	82	9	188	43	3	23	29	1.71
1531--1600	36	1.9	36	94	0	122	41	4	21	32	1.73
1301--1549	14	17.4	14	69	20	103	43	4	23	29	1.72
1414--1607	36	5.4	37	77	11	95	43	3	23	29	1.71
1697--1868	8	22.2	8	65	16	69	47	4	22	26	1.69
1687--1760	24	3.0	24	82	4	76	44	6	22	25	1.77
1757--1827	37	1.9	37	85	5	99	50	2	21	25	1.62
1803--1868	24	2.7	23	84	9	87	45	3	22	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3577--3614	13	2.9	13	88	0	58	44	2	5	47	1.39
3687--3724	13	2.8	14	88	8	60	42	7	7	42	1.63
3687--3724	14	2.8	13	92	8	58	42	7	7	42	1.63

Tables:   1

The End!