Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000241.1 Corchorus capsularis cultivar CVL-1 contig00241, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1957
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.35


Found at i:295 original size:2 final size:2

Alignment explanation


    Indices: 288--315  Score: 56
    Period size: 2  Copynumber: 14.0  Consensus size: 2

        278 TAGGAACTTT

                                                     
        288 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        316 CCAACAGTAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   26  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:1113 original size:15 final size:16

Alignment explanation


    Indices: 1087--1116  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1077 CGGCCTTGTT

                            
       1087 TATTTTTATATATATA
          1 TATTTTTATATATATA

                           
       1103 TATTTTT-TATATAT
          1 TATTTTTATATATAT

       1117 TGTTAATTAG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    7  0.50
  16    7  0.50

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (16 bp):   
TATTTTTATATATATA
Done.