Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002417.1 Corchorus capsularis cultivar CVL-1 contig02423, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.32


Found at i:936 original size:38 final size:38

Alignment explanation


    Indices: 885--959  Score: 141
    Period size: 38  Copynumber: 2.0  Consensus size: 38

        875 GTTTTGGAGA

                                                  
        885 TATAAACAATGCATGAAAAATGTTAGGAATTCACAGTT
          1 TATAAACAATGCATGAAAAATGTTAGGAATTCACAGTT

                                           *     
        923 TATAAACAATGCATGAAAAATGTTAGGAATTTACAGT
          1 TATAAACAATGCATGAAAAATGTTAGGAATTCACAGT

        960 GGAACATCGT


Statistics
Matches: 36,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  38   36  1.00

ACGTcount: A:0.45, C:0.09, G:0.16, T:0.29


Consensus pattern (38 bp):   
TATAAACAATGCATGAAAAATGTTAGGAATTCACAGTT

Found at i:1287 original size:22 final size:22

Alignment explanation


    Indices: 1255--1299  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1245 AAGTCTTGGA

                  *               
       1255 TGGTCGGTAATTGGCTTAAAAC
          1 TGGTCGATAATTGGCTTAAAAC

                          *       
       1277 TGGTCGATAATTGGTTTAAAAC
          1 TGGTCGATAATTGGCTTAAAAC

             
       1299 T
          1 T

       1300 TGATGGTTTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36


Consensus pattern (22 bp):   
TGGTCGATAATTGGCTTAAAAC
Done.