Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002418.1 Corchorus capsularis cultivar CVL-1 contig02424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:90 original size:17 final size:17

Alignment explanation


    Indices: 68--111  Score: 88
    Period size: 17  Copynumber: 2.6  Consensus size: 17

         58 AGTATCCGTT

                             
         68 CATTATATATGATAATA
          1 CATTATATATGATAATA

                             
         85 CATTATATATGATAATA
          1 CATTATATATGATAATA

                      
        102 CATTATATAT
          1 CATTATATAT

        112 TATATATGAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.45, C:0.07, G:0.05, T:0.43


Consensus pattern (17 bp):   
CATTATATATGATAATA
Done.